Variant report

Variant	rs6707509
Chromosome Location	chr2:30603799-30603800
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10495775	0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11885422	0.81[EUR][1000 genomes]
rs12714305	0.81[EUR][1000 genomes]
rs13022414	0.81[EUR][1000 genomes]
rs17009435	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34019625	0.83[EUR][1000 genomes]
rs34113782	0.81[EUR][1000 genomes]
rs34547118	0.84[EUR][1000 genomes]
rs4519570	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6756908	0.81[CEU][hapmap]
rs711238	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs711239	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73925153	0.91[EUR][1000 genomes]
rs7603554	0.83[EUR][1000 genomes]
rs7608507	0.82[EUR][1000 genomes]
rs829609	0.90[EUR][1000 genomes]
rs844193	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs864365	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533886	chr2:30130019-31068764	ZNF genes & repeats Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	nsv833648	chr2:30505882-30696275	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv873769	chr2:30585638-30625264	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:30585600-30605800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr2:30603200-30604400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr2:30603600-30604600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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