Variant report

Variant	rs10496864
Chromosome Location	chr2:141783763-141783764
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs12471645	0.87[EUR][1000 genomes]
rs12471842	0.94[EUR][1000 genomes]
rs12475929	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12475930	0.98[EUR][1000 genomes]
rs12623323	0.87[EUR][1000 genomes]
rs12624219	0.87[EUR][1000 genomes]
rs1525597	0.84[CEU][hapmap]
rs1525599	1.00[CEU][hapmap]
rs16845115	0.87[EUR][1000 genomes]
rs16845177	1.00[CHB][hapmap]
rs16845178	1.00[CHB][hapmap]
rs16845210	1.00[CHB][hapmap]
rs17521615	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1852168	1.00[JPT][hapmap]
rs2091300	0.85[EUR][1000 genomes]
rs34168519	1.00[EUR][1000 genomes]
rs61032295	0.82[AFR][1000 genomes]
rs72975061	0.84[AFR][1000 genomes]
rs7594687	1.00[CHB][hapmap]
rs7600033	1.00[CHB][hapmap]
rs7609294	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875208	chr2:141657878-141795620	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1014208	chr2:141707558-141790148	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv875210	chr2:141764693-141818657	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv875211	chr2:141764693-141846346	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141773600-141806800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:141774200-141785000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:141780200-141787400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr2:141780400-141784600	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr2:141780600-141784600	Weak transcription	HUVEC	blood vessel

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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