Variant report

Variant	rs1525597
Chromosome Location	chr2:141779163-141779164
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10496864	0.84[CEU][hapmap]
rs12471645	0.82[ASN][1000 genomes]
rs12471736	0.98[ASN][1000 genomes]
rs12471842	0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12474699	0.98[ASN][1000 genomes]
rs12475929	0.81[CEU][hapmap];0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12475930	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12619314	0.90[JPT][hapmap]
rs12623323	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12624219	0.89[CHB][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.80[ASN][1000 genomes]
rs1525599	0.84[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs16845115	0.89[CHB][hapmap];0.85[JPT][hapmap];0.86[MEX][hapmap];0.84[ASN][1000 genomes]
rs17521615	0.84[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.83[MKK][hapmap];0.89[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs34168519	0.89[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs57639568	0.95[ASN][1000 genomes]
rs61032295	0.95[ASN][1000 genomes]
rs72975061	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv875208	chr2:141657878-141795620	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1014208	chr2:141707558-141790148	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv875210	chr2:141764693-141818657	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv875211	chr2:141764693-141846346	Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141773600-141806800	Weak transcription	Brain Angular Gyrus	brain
2	chr2:141774200-141785000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr2:141774600-141779800	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr2:141777400-141779600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:141777400-141780400	Enhancers	HMEC	breast
6	chr2:141777600-141779600	Enhancers	NHEK	skin
7	chr2:141777600-141780600	Enhancers	HUVEC	blood vessel
8	chr2:141777800-141779400	Enhancers	Osteobl	bone
9	chr2:141778000-141779400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr2:141778000-141779400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr2:141778000-141779400	Enhancers	NHLF	lung
12	chr2:141778200-141779200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr2:141778200-141779400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:141778200-141779400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
15	chr2:141778200-141779400	Enhancers	NH-A	brain
16	chr2:141778200-141780400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr2:141778400-141780200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr2:141778800-141779400	Enhancers	NHDF-Ad	bronchial
19	chr2:141778800-141779600	Enhancers	HSMM	muscle
20	chr2:141778800-141779800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr2:141778800-141780000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr2:141778800-141780200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr2:141779000-141779200	Flanking Active TSS	Muscle Satellite Cultured Cells	--

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