Variant report

Variant	rs12619314
Chromosome Location	chr2:141732678-141732679
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10201482	0.81[CEU][hapmap];0.82[CHB][hapmap]
rs10928086	0.81[CEU][hapmap]
rs12622921	0.84[ASN][1000 genomes]
rs12624219	0.80[GIH][hapmap]
rs1525597	0.90[JPT][hapmap]
rs1525599	0.85[JPT][hapmap]
rs16845115	0.80[GIH][hapmap]
rs17521615	0.90[JPT][hapmap]
rs2091300	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2380917	0.87[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs2380918	0.83[AFR][1000 genomes];0.91[ASN][1000 genomes]
rs3921277	0.89[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs4954867	0.82[CHB][hapmap]
rs56925193	0.83[ASN][1000 genomes]
rs57639568	0.84[EUR][1000 genomes]
rs61032295	0.84[EUR][1000 genomes]
rs6744686	0.90[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs716000	0.90[CHB][hapmap];0.84[ASN][1000 genomes]
rs7609294	0.93[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs980286	0.86[CEU][hapmap];0.82[CHB][hapmap]
rs980288	0.81[CEU][hapmap];0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv583198	chr2:141510791-142150620	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv1003008	chr2:141518795-141763505	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv875208	chr2:141657878-141795620	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1014208	chr2:141707558-141790148	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv817518	chr2:141714174-142287302	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:141732400-141733200	Enhancers	HUVEC	blood vessel
2	chr2:141732600-141733200	Enhancers	Muscle Satellite Cultured Cells	--
3	chr2:141732600-141733200	Enhancers	Dnd41	blood
4	chr2:141732600-141733400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr2:141732600-141733800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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