Variant report

Variant	rs10496974
Chromosome Location	chr2:145868642-145868643
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs12616031	0.83[AMR][1000 genomes]
rs12988894	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs13002944	0.83[ASN][1000 genomes]
rs13014698	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13026163	0.90[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs13035660	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1509563	0.84[ASN][1000 genomes]
rs1509564	0.84[ASN][1000 genomes]
rs16824481	0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs16824484	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1852681	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs1997287	0.90[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28409418	0.90[ASN][1000 genomes]
rs28534561	0.84[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs28837998	0.92[ASN][1000 genomes]
rs35541381	0.92[ASN][1000 genomes]
rs35690045	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4144811	0.84[ASN][1000 genomes]
rs4662233	0.89[AFR][1000 genomes]
rs67571782	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs68088326	0.90[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7426239	0.90[AMR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv875262	chr2:145830053-145888369	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv875263	chr2:145830053-145892427	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv875264	chr2:145830053-145911634	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1004846	chr2:145852801-145919056	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145857600-145881200	Weak transcription	Ovary	ovary
2	chr2:145863800-145869200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr2:145866000-145868800	Enhancers	NHDF-Ad	bronchial
4	chr2:145866200-145868800	Enhancers	HSMM	muscle
5	chr2:145866800-145869000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr2:145866800-145877800	Weak transcription	Aorta	Aorta
7	chr2:145867600-145871000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr2:145867800-145868800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr2:145867800-145868800	Enhancers	Osteobl	bone
10	chr2:145867800-145869400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr2:145868000-145868800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:145868000-145868800	Enhancers	Muscle Satellite Cultured Cells	--
13	chr2:145868000-145868800	Enhancers	HMEC	breast
14	chr2:145868000-145868800	Enhancers	NH-A	brain
15	chr2:145868000-145869000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr2:145868000-145869000	Enhancers	HUVEC	blood vessel
17	chr2:145868000-145869000	Enhancers	NHEK	skin
18	chr2:145868200-145868800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr2:145868200-145868800	Enhancers	Fetal Lung	lung
20	chr2:145868200-145868800	Enhancers	Placenta Amnion	Placenta Amnion
21	chr2:145868400-145868800	Enhancers	HSMMtube	muscle
22	chr2:145868400-145869000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr2:145868400-145869000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr2:145868400-145870000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr2:145868600-145868800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:145868600-145869400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr2:145868600-145870400	Enhancers	Adipose Nuclei	Adipose

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