Variant report

Variant	rs1509563
Chromosome Location	chr2:145868090-145868091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10496974	0.84[ASN][1000 genomes]
rs13000389	0.88[EUR][1000 genomes]
rs13002944	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13014698	0.84[ASN][1000 genomes]
rs13026163	0.84[ASN][1000 genomes]
rs1509564	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1830317	0.83[EUR][1000 genomes]
rs1858152	0.85[EUR][1000 genomes]
rs1997287	0.84[ASN][1000 genomes]
rs4144811	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7426239	0.83[ASN][1000 genomes]
rs7583434	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7588808	0.83[EUR][1000 genomes]
rs787433	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv431768	chr2:145741527-145981491	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv875262	chr2:145830053-145888369	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv875263	chr2:145830053-145892427	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv875264	chr2:145830053-145911634	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1004846	chr2:145852801-145919056	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:145854800-145868400	Weak transcription	HSMMtube	muscle
2	chr2:145857600-145881200	Weak transcription	Ovary	ovary
3	chr2:145863800-145869200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
4	chr2:145864200-145868600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr2:145864600-145868400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr2:145866000-145868800	Enhancers	NHDF-Ad	bronchial
7	chr2:145866200-145868800	Enhancers	HSMM	muscle
8	chr2:145866800-145869000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:145866800-145877800	Weak transcription	Aorta	Aorta
10	chr2:145867200-145868600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:145867600-145871000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr2:145867800-145868800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr2:145867800-145868800	Enhancers	Osteobl	bone
14	chr2:145867800-145869400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr2:145868000-145868600	Enhancers	NHLF	lung
16	chr2:145868000-145868800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr2:145868000-145868800	Enhancers	Muscle Satellite Cultured Cells	--
18	chr2:145868000-145868800	Enhancers	HMEC	breast
19	chr2:145868000-145868800	Enhancers	NH-A	brain
20	chr2:145868000-145869000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr2:145868000-145869000	Enhancers	HUVEC	blood vessel
22	chr2:145868000-145869000	Enhancers	NHEK	skin

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