Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17354592	0.81[EUR][1000 genomes]
rs17355585	1.00[ASW][hapmap];0.87[CEU][hapmap];0.81[TSI][hapmap]
rs17708980	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17709022	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17709220	0.81[EUR][1000 genomes]
rs17760082	0.83[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs17760712	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.93[TSI][hapmap]
rs35103373	1.00[AFR][1000 genomes]
rs6723034	1.00[AFR][1000 genomes]
rs72896867	0.83[AFR][1000 genomes]
rs72896889	0.83[AFR][1000 genomes]
rs72900839	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72900902	0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs72904626	0.81[EUR][1000 genomes]
rs72904633	0.81[EUR][1000 genomes]
rs72904642	0.81[EUR][1000 genomes]
rs72911485	1.00[AFR][1000 genomes]
rs72913317	1.00[AFR][1000 genomes]
rs72913372	0.83[AFR][1000 genomes]
rs7424417	1.00[ASW][hapmap];0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs7561947	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003974	chr2:189331760-189827814	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv1000932	chr2:189542210-189677277	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv536088	chr2:189542210-189677277	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189551000-189557200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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