Variant report

Variant	rs6723034
Chromosome Location	chr2:189315340-189315341
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:189305712..189307613-chr2:189312855..189315391,2	MCF-7	breast:
2	chr2:189314011..189316872-chr2:189317006..189319445,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10460383	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs10497681	1.00[AFR][1000 genomes]
rs10931347	1.00[JPT][hapmap]
rs11688935	1.00[JPT][hapmap]
rs12105671	1.00[JPT][hapmap]
rs12613370	0.90[ASN][1000 genomes]
rs12619948	1.00[JPT][hapmap]
rs12693496	1.00[JPT][hapmap]
rs13014162	0.81[ASN][1000 genomes]
rs34711211	0.90[ASN][1000 genomes]
rs35103373	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35409022	0.81[ASN][1000 genomes]
rs4233800	1.00[JPT][hapmap]
rs4278900	0.90[ASN][1000 genomes]
rs4292061	0.90[ASN][1000 genomes]
rs4353611	1.00[JPT][hapmap]
rs4446047	1.00[JPT][hapmap]
rs4505490	1.00[JPT][hapmap]
rs56110119	0.87[ASN][1000 genomes]
rs6434274	1.00[JPT][hapmap]
rs6434275	1.00[JPT][hapmap]
rs6434276	1.00[JPT][hapmap]
rs6434279	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs67050668	0.81[ASN][1000 genomes]
rs6711599	0.90[ASN][1000 genomes]
rs6727073	1.00[JPT][hapmap]
rs72896867	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72896889	0.83[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs72900839	1.00[AFR][1000 genomes]
rs72911485	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72913310	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72913317	1.00[AFR][1000 genomes];0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72913357	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs72913372	0.83[AFR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7424417	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.86[TSI][hapmap];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7557622	1.00[JPT][hapmap]
rs7559636	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7575702	1.00[JPT][hapmap]
rs7577484	1.00[JPT][hapmap]
rs7579249	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534341	chr2:189200405-189368467	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv533786	chr2:189248503-189354495	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189285600-189318800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:189285800-189318200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:189304400-189315800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr2:189304400-189316600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr2:189305800-189318400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr2:189306400-189317200	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr2:189306600-189339000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr2:189307400-189322400	Weak transcription	A549	lung
9	chr2:189308200-189315400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr2:189308200-189318400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr2:189308400-189317000	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr2:189308400-189317400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
13	chr2:189309600-189317200	Weak transcription	HUVEC	blood vessel
14	chr2:189311200-189318200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr2:189311600-189317000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr2:189312600-189318600	Weak transcription	Fetal Intestine Small	intestine
17	chr2:189314200-189318600	Weak transcription	Fetal Muscle Leg	muscle
18	chr2:189314600-189316000	Weak transcription	Fetal Lung	lung
19	chr2:189314600-189323400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr2:189315000-189315400	Enhancers	HUES64 Cell Line	embryonic stem cell

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