Variant report

Variant	rs7559636
Chromosome Location	chr2:189255251-189255252
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10460383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10931347	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs10931350	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs11688935	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.82[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs12105671	0.85[GIH][hapmap];1.00[JPT][hapmap]
rs12613370	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12619948	1.00[JPT][hapmap]
rs12693496	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13014162	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34711211	1.00[ASN][1000 genomes]
rs35103373	0.81[ASN][1000 genomes]
rs35409022	0.90[ASN][1000 genomes]
rs4233800	0.88[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4278900	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4292061	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4353610	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4353611	1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4446047	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4494698	1.00[YRI][hapmap]
rs4505490	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4563189	1.00[YRI][hapmap]
rs4625863	1.00[YRI][hapmap]
rs4666761	1.00[YRI][hapmap]
rs6434274	0.96[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6434275	0.95[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6434276	1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.93[TSI][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6434279	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67050668	0.90[ASN][1000 genomes]
rs6711599	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6723034	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs6727073	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72896867	0.81[ASN][1000 genomes]
rs72896889	0.81[ASN][1000 genomes]
rs72911485	0.81[ASN][1000 genomes]
rs72913310	0.81[ASN][1000 genomes]
rs72913317	0.81[ASN][1000 genomes]
rs72913357	0.81[ASN][1000 genomes]
rs72913372	0.81[ASN][1000 genomes]
rs7419883	1.00[CEU][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7424417	1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs7425417	1.00[YRI][hapmap]
rs7557622	1.00[JPT][hapmap]
rs7575702	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7577484	0.96[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7579249	0.81[ASN][1000 genomes]
rs7585851	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7597229	1.00[YRI][hapmap]
rs9288155	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010394	chr2:188994398-189284092	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	10 gene(s)	inside rSNPs	diseases
2	nsv998395	chr2:189018246-189284092	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1010330	chr2:189182307-189265614	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv999135	chr2:189184937-189265614	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv534341	chr2:189200405-189368467	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv533786	chr2:189248503-189354495	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189245200-189259800	Weak transcription	Gastric	stomach
2	chr2:189247600-189259800	Weak transcription	Pancreas	Pancrea
3	chr2:189247800-189259600	Weak transcription	Fetal Heart	heart
4	chr2:189248400-189255400	Weak transcription	Osteobl	bone
5	chr2:189250200-189259800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr2:189250200-189261000	Weak transcription	Fetal Stomach	stomach
7	chr2:189250400-189259600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr2:189251000-189255600	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr2:189251000-189258200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr2:189251000-189259800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:189251000-189260000	Weak transcription	Fetal Intestine Small	intestine
12	chr2:189251000-189260000	Weak transcription	Lung	lung
13	chr2:189251000-189260000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr2:189251000-189285200	Weak transcription	Aorta	Aorta
15	chr2:189251200-189255600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr2:189251200-189255600	Weak transcription	Fetal Lung	lung
17	chr2:189251200-189257600	Weak transcription	Fetal Intestine Large	intestine
18	chr2:189251200-189257800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr2:189251200-189259800	Weak transcription	Placenta	Placenta
20	chr2:189251200-189268400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr2:189251200-189269000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr2:189251200-189269400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:189251200-189269400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr2:189251200-189270000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr2:189251200-189270200	Weak transcription	H9 Cell Line	embryonic stem cell
26	chr2:189251800-189263600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr2:189252000-189257400	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr2:189252400-189262400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr2:189253800-189260000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr2:189254400-189256400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
31	chr2:189254600-189259800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr2:189254800-189267200	Weak transcription	Ovary	ovary
33	chr2:189255200-189255400	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell

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