Variant report

Variant	rs6434279
Chromosome Location	chr2:189305665-189305666
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10460383	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10931347	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs10931350	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11688935	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12105671	1.00[JPT][hapmap]
rs12613370	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12619948	1.00[JPT][hapmap]
rs12693496	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs13014162	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34711211	0.90[ASN][1000 genomes]
rs35103373	0.90[ASN][1000 genomes]
rs35409022	0.81[ASN][1000 genomes]
rs4233800	0.88[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4278900	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4292061	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4353610	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4353611	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4446047	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4494698	1.00[YRI][hapmap]
rs4505490	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4563189	1.00[YRI][hapmap]
rs4625863	1.00[YRI][hapmap]
rs4666761	1.00[YRI][hapmap]
rs56110119	0.87[ASN][1000 genomes]
rs6434274	0.96[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6434275	0.96[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs6434276	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs67050668	0.81[ASN][1000 genomes]
rs6711599	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6723034	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs6727073	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72896867	0.90[ASN][1000 genomes]
rs72896889	0.90[ASN][1000 genomes]
rs72911485	0.90[ASN][1000 genomes]
rs72913310	0.90[ASN][1000 genomes]
rs72913317	0.90[ASN][1000 genomes]
rs72913357	0.90[ASN][1000 genomes]
rs72913372	0.90[ASN][1000 genomes]
rs7419883	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7424417	1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs7425417	1.00[YRI][hapmap]
rs7557622	1.00[JPT][hapmap]
rs7559636	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7575702	1.00[CEU][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7577484	0.96[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7579249	0.90[ASN][1000 genomes]
rs7585851	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7597229	1.00[YRI][hapmap]
rs9288155	1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534341	chr2:189200405-189368467	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv533786	chr2:189248503-189354495	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv584055	chr2:189266823-189493686	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:189285600-189318800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr2:189285800-189318200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr2:189292400-189306200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr2:189293600-189308800	Weak transcription	HUVEC	blood vessel
5	chr2:189294200-189308000	Weak transcription	Ovary	ovary
6	chr2:189303200-189306400	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr2:189303400-189306600	Enhancers	iPS-20b Cell Line	embryonic stem cell
8	chr2:189303400-189308200	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr2:189303400-189308400	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr2:189304000-189306800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr2:189304000-189308200	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr2:189304200-189305800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr2:189304200-189306400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr2:189304200-189307400	Enhancers	A549	lung
15	chr2:189304400-189315800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr2:189304400-189316600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr2:189305000-189306000	Weak transcription	H1 Cell Line	embryonic stem cell
18	chr2:189305200-189306400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr2:189305200-189307400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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