Variant report

Variant	rs10498573
Chromosome Location	chr14:84723226-84723227
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs11159639	0.94[ASN][1000 genomes]
rs11159642	0.97[ASN][1000 genomes]
rs11159643	0.97[ASN][1000 genomes]
rs11627969	0.97[ASN][1000 genomes]
rs12431512	0.97[ASN][1000 genomes]
rs12431785	0.97[ASN][1000 genomes]
rs12431814	0.97[ASN][1000 genomes]
rs12436833	0.97[ASN][1000 genomes]
rs12587226	0.97[ASN][1000 genomes]
rs12587381	0.97[ASN][1000 genomes]
rs12587885	0.94[ASN][1000 genomes]
rs12587938	0.97[ASN][1000 genomes]
rs12587945	0.97[ASN][1000 genomes]
rs12588383	0.96[ASN][1000 genomes]
rs12589263	0.97[ASN][1000 genomes]
rs12590763	0.97[ASN][1000 genomes]
rs12880079	0.97[ASN][1000 genomes]
rs12880539	0.97[ASN][1000 genomes]
rs12880684	0.97[ASN][1000 genomes]
rs12893358	0.97[ASN][1000 genomes]
rs17705790	0.97[ASN][1000 genomes]
rs2372587	0.92[ASN][1000 genomes]
rs34365118	0.97[ASN][1000 genomes]
rs34768743	0.97[ASN][1000 genomes]
rs35325259	0.97[ASN][1000 genomes]
rs35465761	0.97[ASN][1000 genomes]
rs35599611	0.97[ASN][1000 genomes]
rs36011380	0.97[ASN][1000 genomes]
rs4264327	0.95[ASN][1000 genomes]
rs4286044	0.90[EUR][1000 genomes]
rs4315286	0.97[ASN][1000 genomes]
rs4331274	0.97[ASN][1000 genomes]
rs4359364	0.97[ASN][1000 genomes]
rs4359365	0.90[EUR][1000 genomes]
rs4542588	0.97[ASN][1000 genomes]
rs4628891	0.94[ASN][1000 genomes]
rs4638505	0.97[ASN][1000 genomes]
rs4899848	0.97[ASN][1000 genomes]
rs56821943	0.90[EUR][1000 genomes]
rs61983264	0.97[ASN][1000 genomes]
rs8005561	0.85[EUR][1000 genomes]
rs8005665	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv902160	chr14:84694867-84730585	Enhancers Bivalent Enhancer Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv902161	chr14:84699866-84769903	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:84720600-84723600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr14:84720800-84732200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:84723200-84723600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr14:84723200-84728000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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