Variant report

Variant	rs10498579
Chromosome Location	chr14:85596579-85596580
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10147553	0.93[JPT][hapmap];0.84[ASN][1000 genomes]
rs12432779	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12435632	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12879255	0.83[AMR][1000 genomes]
rs12887049	0.90[ASN][1000 genomes]
rs12892485	0.84[ASN][1000 genomes]
rs12895341	0.85[AMR][1000 genomes]
rs17120779	0.83[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs17258547	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17796484	0.83[CHB][hapmap];0.94[JPT][hapmap];0.90[ASN][1000 genomes]
rs2372836	0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2888425	0.98[ASN][1000 genomes]
rs36080287	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4243673	0.85[AMR][1000 genomes]
rs4577003	0.80[ASN][1000 genomes]
rs72685722	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2751288	chr14:84815330-85704047	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1048026	chr14:85330544-85686322	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3401331	chr14:85332747-85716351	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv565423	chr14:85427846-85638746	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv832846	chr14:85517736-85715650	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv983979	chr14:85542796-85613582	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv456355	chr14:85565987-85616803	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv565425	chr14:85565987-85616803	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv3364668	chr14:85596248-85613282	Enhancers Weak transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:85591400-85597000	Weak transcription	HUES6 Cell Line	embryonic stem cell
2	chr14:85591800-85597400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:85592000-85597000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr14:85592000-85597400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:85595200-85598200	Enhancers	Ovary	ovary
6	chr14:85595400-85597400	Enhancers	Fetal Stomach	stomach
7	chr14:85595600-85597000	Weak transcription	Stomach Mucosa	stomach
8	chr14:85596200-85596800	Weak transcription	Fetal Intestine Small	intestine
9	chr14:85596400-85597000	Weak transcription	Pancreas	Pancrea

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links