Variant report

Variant	rs10498885
Chromosome Location	chr6:73571078-73571079
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11961063	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11963349	1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964308	1.00[YRI][hapmap];0.81[AFR][1000 genomes]
rs16882974	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs16883008	1.00[ASW][hapmap];0.89[YRI][hapmap];0.87[AFR][1000 genomes]
rs16883011	0.86[LWK][hapmap]
rs73533663	1.00[AMR][1000 genomes]
rs7742114	0.80[AFR][1000 genomes]
rs7755733	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
3	nsv470834	chr6:73546750-73596605	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
4	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73509200-73572200	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73566800-73571200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:73566800-73571600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr6:73567800-73571600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:73567800-73571600	Weak transcription	HMEC	breast
6	chr6:73568200-73571400	Weak transcription	NH-A	brain
7	chr6:73568200-73571600	Weak transcription	NHEK	skin
8	chr6:73569600-73575600	Enhancers	HSMMtube	muscle
9	chr6:73569800-73571200	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:73569800-73571800	Enhancers	HSMM	muscle
11	chr6:73569800-73572600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr6:73569800-73573200	Enhancers	HUVEC	blood vessel
13	chr6:73570000-73572000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:73570000-73573200	Enhancers	Osteobl	bone
15	chr6:73570200-73573200	Enhancers	NHLF	lung
16	chr6:73570400-73571800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:73570400-73572200	Enhancers	Fetal Heart	heart
18	chr6:73570400-73572400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr6:73570400-73573200	Enhancers	Cortex derived primary cultured neurospheres	brain
20	chr6:73570400-73576600	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:73570600-73571800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr6:73570600-73572000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr6:73570600-73572400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:73570600-73573200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr6:73570800-73572600	Enhancers	Aorta	Aorta
26	chr6:73571000-73571400	Enhancers	Psoas Muscle	Psoas
27	chr6:73571000-73572000	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr6:73571000-73572000	Enhancers	Brain Anterior Caudate	brain
29	chr6:73571000-73572600	Enhancers	Primary hematopoietic stem cells short term culture	blood
30	chr6:73571000-73572600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr6:73571000-73572600	Enhancers	Colon Smooth Muscle	Colon
32	chr6:73571000-73572600	Enhancers	NHDF-Ad	bronchial
33	chr6:73571000-73572800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
34	chr6:73571000-73573200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr6:73571000-73576200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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