Variant report

Variant	rs16882974
Chromosome Location	chr6:73576398-73576399
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10498885	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs11961063	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11962810	1.00[AMR][1000 genomes]
rs11963349	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs11964308	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11966403	1.00[AMR][1000 genomes]
rs11969811	1.00[AMR][1000 genomes]
rs16883008	0.89[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28537896	1.00[AMR][1000 genomes]
rs59662349	1.00[AMR][1000 genomes]
rs60200264	1.00[AMR][1000 genomes]
rs6900269	1.00[AMR][1000 genomes]
rs7742114	0.84[AFR][1000 genomes]
rs7755733	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	nsv470834	chr6:73546750-73596605	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
3	nsv886155	chr6:73551937-73649330	Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73570400-73576600	Enhancers	Skeletal Muscle Female	skeletal muscle
2	chr6:73572000-73590200	Weak transcription	GM12878-XiMat	blood
3	chr6:73572200-73576400	Enhancers	HSMM	muscle
4	chr6:73572600-73583800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr6:73575800-73595400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73576000-73576400	Enhancers	Psoas Muscle	Psoas
7	chr6:73576000-73579200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:73576200-73576400	Enhancers	Aorta	Aorta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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