Variant report

Variant	rs6900269
Chromosome Location	chr6:73493859-73493860
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11962810	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11964308	1.00[AMR][1000 genomes]
rs11966403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11969811	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16882974	1.00[AMR][1000 genomes]
rs16883008	1.00[AMR][1000 genomes]
rs28537896	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59662349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60200264	1.00[AMR][1000 genomes]
rs6918661	1.00[CHB][hapmap]
rs7755733	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73479600-73507800	Weak transcription	Primary T cells from cord blood	blood
2	chr6:73489800-73507000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:73490200-73494800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:73490800-73494600	Enhancers	Fetal Heart	heart
5	chr6:73491800-73494400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:73492400-73495200	Enhancers	HMEC	breast
7	chr6:73492600-73494000	Enhancers	Fetal Lung	lung
8	chr6:73492600-73494200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr6:73492600-73495000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:73492600-73495000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:73492600-73508000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr6:73492800-73494400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr6:73492800-73494600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:73492800-73495000	Enhancers	NHEK	skin
15	chr6:73493000-73495000	Enhancers	NH-A	brain
16	chr6:73493200-73494000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:73493200-73494800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr6:73493200-73495000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
19	chr6:73493200-73495000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr6:73493400-73494000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr6:73493400-73494200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr6:73493600-73494000	Enhancers	Esophagus	oesophagus
23	chr6:73493600-73494000	Enhancers	Fetal Thymus	thymus
24	chr6:73493600-73494000	Enhancers	Psoas Muscle	Psoas
25	chr6:73493600-73494000	Flanking Active TSS	Osteobl	bone
26	chr6:73493600-73494400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
27	chr6:73493600-73494400	Enhancers	Skeletal Muscle Female	skeletal muscle
28	chr6:73493600-73494400	Enhancers	HSMM	muscle
29	chr6:73493600-73494400	Enhancers	NHLF	lung
30	chr6:73493600-73494600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr6:73493600-73495200	Enhancers	Aorta	Aorta
32	chr6:73493800-73494000	Enhancers	Fetal Brain Male	brain
33	chr6:73493800-73494400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
34	chr6:73493800-73494600	Strong transcription	Primary B cells from cord blood	blood
35	chr6:73493800-73494800	Enhancers	NHDF-Ad	bronchial

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