Variant report

Variant	rs6918661
Chromosome Location	chr6:73432240-73432241
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs16882712	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16882715	0.91[YRI][hapmap];0.85[EUR][1000 genomes]
rs17692055	0.86[EUR][1000 genomes]
rs17748888	0.90[EUR][1000 genomes]
rs17748966	0.90[EUR][1000 genomes]
rs55681253	0.81[EUR][1000 genomes]
rs55791694	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56307817	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56379143	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56897294	0.90[EUR][1000 genomes]
rs57822223	0.90[EUR][1000 genomes]
rs58412450	0.80[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs58599475	0.90[EUR][1000 genomes]
rs58816739	0.86[EUR][1000 genomes]
rs60412240	0.90[EUR][1000 genomes]
rs60620751	0.88[EUR][1000 genomes]
rs6453597	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6900269	1.00[CHB][hapmap]
rs6903897	0.80[YRI][hapmap]
rs6934995	0.84[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6938189	0.82[CEU][hapmap];0.88[EUR][1000 genomes]
rs73531872	0.86[EUR][1000 genomes]
rs73533641	0.86[EUR][1000 genomes]
rs73533649	0.90[EUR][1000 genomes]
rs73533670	0.90[EUR][1000 genomes]
rs73533685	0.90[EUR][1000 genomes]
rs73535764	0.90[EUR][1000 genomes]
rs73535765	0.90[EUR][1000 genomes]
rs73535768	0.90[EUR][1000 genomes]
rs73535770	0.88[EUR][1000 genomes]
rs73535771	0.88[EUR][1000 genomes]
rs73535789	0.81[EUR][1000 genomes]
rs73537767	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73537770	0.96[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs73537781	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs73756018	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7758797	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs9293909	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73399400-73438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73423000-73434000	Weak transcription	Primary B cells from cord blood	blood
3	chr6:73425200-73437600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr6:73429600-73434400	Weak transcription	Psoas Muscle	Psoas
5	chr6:73430400-73434200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73430600-73433400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:73430600-73434200	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:73430600-73437600	Weak transcription	HSMM	muscle
9	chr6:73430800-73434000	Weak transcription	Osteobl	bone
10	chr6:73430800-73434200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr6:73431600-73432400	Enhancers	GM12878-XiMat	blood
12	chr6:73432200-73434000	Weak transcription	Primary B cells from peripheral blood	blood
13	chr6:73432200-73437400	Weak transcription	Primary hematopoietic stem cells short term culture	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links