Variant report

Variant	rs73535789
Chromosome Location	chr6:73403156-73403157
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10485212	0.85[ASN][1000 genomes]
rs16882707	0.80[AFR][1000 genomes]
rs16882712	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs16882715	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17692552	0.85[ASN][1000 genomes]
rs17749123	0.85[ASN][1000 genomes]
rs41265505	0.85[ASN][1000 genomes]
rs55681253	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55791694	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs56307817	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56379143	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58412450	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6453597	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6918661	0.81[EUR][1000 genomes]
rs6934995	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73537767	0.81[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73537770	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73537781	0.82[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73537796	1.00[ASN][1000 genomes]
rs73539789	1.00[ASN][1000 genomes]
rs73756010	0.80[AFR][1000 genomes]
rs73756018	0.83[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs768790	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749594	1.00[ASN][1000 genomes]
rs7758797	0.83[EUR][1000 genomes]
rs953742	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1794408	chr6:73363298-73419987	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv463152	chr6:73369739-73406890	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv603692	chr6:73369739-73406890	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73379400-73412600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr6:73381200-73403600	Weak transcription	Primary T cells from cord blood	blood
3	chr6:73382800-73414200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:73383600-73412200	Weak transcription	Primary B cells from cord blood	blood
5	chr6:73385400-73412400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:73392400-73429800	Weak transcription	HSMM	muscle
7	chr6:73395600-73408800	Weak transcription	HMEC	breast
8	chr6:73399400-73419200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr6:73399400-73429200	Weak transcription	Aorta	Aorta
10	chr6:73399400-73438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:73401600-73403800	Weak transcription	GM12878-XiMat	blood
12	chr6:73402000-73403200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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