Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73326966..73327836-chr6:73839389..73839934,2	MCF-7	breast:
2	chr6:73326755..73329181-chr6:73329336..73331379,2	K562	blood:

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10943045	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12190092	0.86[ASN][1000 genomes]
rs12193274	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12196826	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12203288	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs12214096	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16882715	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs17692552	1.00[ASN][1000 genomes]
rs17749123	1.00[ASN][1000 genomes]
rs41265505	1.00[ASN][1000 genomes]
rs4288166	1.00[CHB][hapmap]
rs56307817	0.85[ASN][1000 genomes]
rs56379143	0.85[ASN][1000 genomes]
rs58412450	0.85[ASN][1000 genomes]
rs6934995	0.85[ASN][1000 genomes]
rs73535789	0.85[ASN][1000 genomes]
rs73537770	0.85[ASN][1000 genomes]
rs73537796	0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73539789	0.85[ASN][1000 genomes]
rs768790	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[ASN][1000 genomes]
rs7749594	0.85[ASN][1000 genomes]
rs867520	0.88[YRI][hapmap]
rs953742	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73323800-73328800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:73324000-73327400	Weak transcription	Primary T cells fromperipheralblood	blood
3	chr6:73324600-73329400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:73326200-73329400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr6:73326400-73329000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
6	chr6:73326400-73329200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:73326600-73327400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr6:73326600-73328800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr6:73326600-73329000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:73326600-73329000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
11	chr6:73326600-73329200	Weak transcription	Primary B cells from cord blood	blood
12	chr6:73326800-73328800	Weak transcription	Fetal Heart	heart
13	chr6:73327000-73327400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr6:73327000-73328400	Weak transcription	Primary T cells from cord blood	blood

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