Variant report

Variant	rs73539789
Chromosome Location	chr6:73448466-73448467
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10485212	0.85[ASN][1000 genomes]
rs16882715	1.00[ASN][1000 genomes]
rs17692552	0.85[ASN][1000 genomes]
rs17749123	0.85[ASN][1000 genomes]
rs41265505	0.85[ASN][1000 genomes]
rs55681253	0.93[ASN][1000 genomes]
rs56307817	1.00[ASN][1000 genomes]
rs56379143	1.00[ASN][1000 genomes]
rs58412450	1.00[ASN][1000 genomes]
rs6934995	1.00[ASN][1000 genomes]
rs73535789	1.00[ASN][1000 genomes]
rs73537770	1.00[ASN][1000 genomes]
rs73537796	1.00[ASN][1000 genomes]
rs73539714	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs768790	1.00[ASN][1000 genomes]
rs7749594	1.00[ASN][1000 genomes]
rs953742	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886154	chr6:73442239-73471683	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73437800-73455200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr6:73438400-73455400	Weak transcription	HMEC	breast
3	chr6:73443200-73455400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73444200-73448600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:73447800-73449600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73448000-73450200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr6:73448400-73448800	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr6:73448400-73449200	Enhancers	Primary B cells from cord blood	blood
9	chr6:73448400-73449200	Flanking Active TSS	GM12878-XiMat	blood
10	chr6:73448400-73451800	Enhancers	Primary B cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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