Variant report

Variant	rs16882707
Chromosome Location	chr6:73397380-73397381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10943047	1.00[CEU][hapmap]
rs11967126	1.00[CEU][hapmap]
rs12110561	1.00[CEU][hapmap]
rs2039107	1.00[CEU][hapmap]
rs4311478	1.00[CEU][hapmap]
rs4403240	1.00[CEU][hapmap]
rs6453595	1.00[CEU][hapmap]
rs6903897	1.00[CEU][hapmap]
rs6918190	1.00[CEU][hapmap]
rs6924417	1.00[CEU][hapmap]
rs73535789	0.80[AFR][1000 genomes]
rs73756006	0.83[AFR][1000 genomes]
rs73756010	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7746456	1.00[CEU][hapmap]
rs7749673	1.00[CEU][hapmap]
rs867520	1.00[CEU][hapmap]
rs9293893	1.00[CEU][hapmap]
rs9446694	1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1794408	chr6:73363298-73419987	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv463152	chr6:73369739-73406890	Weak transcription Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv603692	chr6:73369739-73406890	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73359600-73398800	Weak transcription	Primary B cells from peripheral blood	blood
2	chr6:73377200-73399000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr6:73379400-73412600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:73381200-73403600	Weak transcription	Primary T cells from cord blood	blood
5	chr6:73382800-73414200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:73383600-73412200	Weak transcription	Primary B cells from cord blood	blood
7	chr6:73384800-73399800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:73385400-73412400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:73386200-73399000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:73387200-73399000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr6:73392400-73429800	Weak transcription	HSMM	muscle
12	chr6:73395600-73408800	Weak transcription	HMEC	breast
13	chr6:73396200-73398800	Weak transcription	Osteobl	bone
14	chr6:73397000-73399400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
15	chr6:73397200-73397400	Flanking Active TSS	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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