Variant report

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs11967126	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs12110561	1.00[CEU][hapmap]
rs16882670	0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs16882707	1.00[CEU][hapmap]
rs2039107	1.00[CEU][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28402218	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4311478	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4403240	1.00[CEU][hapmap];0.90[YRI][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59021804	1.00[EUR][1000 genomes]
rs60563419	1.00[EUR][1000 genomes]
rs60690955	1.00[EUR][1000 genomes]
rs6453595	0.91[ASW][hapmap];1.00[CEU][hapmap];0.94[MKK][hapmap];0.86[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903897	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6918190	1.00[CEU][hapmap]
rs6924417	1.00[CEU][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73756006	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7746456	1.00[CEU][hapmap];0.90[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7749673	1.00[CEU][hapmap]
rs7772464	1.00[EUR][1000 genomes]
rs867520	1.00[CEU][hapmap]
rs9293893	0.91[ASW][hapmap];1.00[CEU][hapmap];0.94[MKK][hapmap];0.82[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10943047	MSX1	trans	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73334400-73358800	Weak transcription	HSMM	muscle
2	chr6:73336200-73359000	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:73336200-73362800	Weak transcription	Primary B cells from cord blood	blood
4	chr6:73338600-73358600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:73346800-73358800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:73352000-73358600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:73355000-73358600	Weak transcription	Skeletal Muscle Female	skeletal muscle
8	chr6:73355200-73362200	Weak transcription	Psoas Muscle	Psoas
9	chr6:73355600-73357800	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:73356200-73356800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:73356200-73357400	Enhancers	HMEC	breast
12	chr6:73356200-73357800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr6:73356200-73358000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr6:73356400-73356800	Enhancers	Osteobl	bone
15	chr6:73356400-73357200	Enhancers	NHEK	skin
16	chr6:73356600-73359000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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