Variant report

Variant	rs7772464
Chromosome Location	chr6:73435744-73435745
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10943047	1.00[EUR][1000 genomes]
rs11967126	1.00[EUR][1000 genomes]
rs16882670	1.00[EUR][1000 genomes]
rs2039107	1.00[EUR][1000 genomes]
rs28402218	1.00[EUR][1000 genomes]
rs4311478	1.00[EUR][1000 genomes]
rs4403240	1.00[EUR][1000 genomes]
rs59021804	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60563419	1.00[EUR][1000 genomes]
rs60690955	1.00[EUR][1000 genomes]
rs6453595	1.00[EUR][1000 genomes]
rs6903897	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6924417	1.00[EUR][1000 genomes]
rs6934303	1.00[EUR][1000 genomes]
rs73753218	1.00[EUR][1000 genomes]
rs73756006	1.00[EUR][1000 genomes]
rs7738694	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs7746456	1.00[EUR][1000 genomes]
rs9293893	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73399400-73438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73425200-73437600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:73430600-73437600	Weak transcription	HSMM	muscle
4	chr6:73432200-73437400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:73434600-73437000	Weak transcription	Primary B cells from cord blood	blood
6	chr6:73434600-73437200	Weak transcription	Primary B cells from peripheral blood	blood
7	chr6:73434600-73437400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr6:73434600-73437400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr6:73434600-73437400	Weak transcription	Osteobl	bone
10	chr6:73434800-73436600	Weak transcription	GM12878-XiMat	blood
11	chr6:73435200-73437400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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