Variant report

Variant	rs6934303
Chromosome Location	chr6:73656825-73656826
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73652529..73654349-chr6:73656733..73659512,2	K562	blood:
2	chr6:73655234..73657018-chr6:73657854..73660537,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11967126	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1574007	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs16883160	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56752027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57053969	1.00[EUR][1000 genomes]
rs58410601	1.00[EUR][1000 genomes]
rs59821553	1.00[EUR][1000 genomes]
rs60410946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60563419	1.00[EUR][1000 genomes]
rs60690955	1.00[EUR][1000 genomes]
rs6920341	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6938067	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73531793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533925	1.00[EUR][1000 genomes]
rs73533926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73535910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753218	1.00[EUR][1000 genomes]
rs7744354	1.00[CEU][hapmap]
rs7745866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764373	1.00[CEU][hapmap]
rs7772464	1.00[EUR][1000 genomes]
rs9442873	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442875	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9442876	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446794	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9446799	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9446800	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446801	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446813	1.00[EUR][1000 genomes]
rs9446814	1.00[CEU][hapmap]
rs9446816	1.00[CEU][hapmap]
rs9446817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446818	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9446819	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9446820	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446821	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446822	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446823	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9446852	1.00[CEU][hapmap]
rs9446853	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73624600-73658600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73650400-73660000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73653800-73657000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:73653800-73660200	Weak transcription	Stomach Mucosa	stomach
6	chr6:73654400-73657800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:73654600-73659000	Weak transcription	HSMM	muscle
8	chr6:73654600-73660200	Weak transcription	Aorta	Aorta
9	chr6:73654800-73662400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:73655400-73657600	Enhancers	Fetal Lung	lung
11	chr6:73655600-73657000	Enhancers	Osteobl	bone
12	chr6:73655600-73657200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr6:73655800-73660000	Weak transcription	Psoas Muscle	Psoas
14	chr6:73655800-73660200	Weak transcription	Placenta	Placenta
15	chr6:73656000-73657000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr6:73656000-73660200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:73656200-73660000	Weak transcription	HSMMtube	muscle
18	chr6:73656400-73657000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr6:73656600-73657000	Flanking Active TSS	A549	lung

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