Variant report

Variant	rs9446822
Chromosome Location	chr6:73728559-73728560
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73725791..73728696-chr6:73728856..73731105,2	K562	blood:

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11967126	1.00[EUR][1000 genomes]
rs1574007	1.00[CEU][hapmap];0.95[YRI][hapmap];0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16883160	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56752027	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57053969	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58410601	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59821553	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60410946	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60563419	1.00[EUR][1000 genomes]
rs60690955	1.00[EUR][1000 genomes]
rs6920341	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6934303	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938067	1.00[CEU][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73531793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533925	0.94[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73533926	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533936	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73535910	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753218	1.00[EUR][1000 genomes]
rs7744354	1.00[CEU][hapmap]
rs7745866	0.94[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764373	1.00[CEU][hapmap]
rs7771553	1.00[CEU][hapmap]
rs7771888	1.00[CEU][hapmap]
rs9442873	1.00[CEU][hapmap];0.86[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442875	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9442876	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446794	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[EUR][1000 genomes]
rs9446799	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[EUR][1000 genomes]
rs9446800	1.00[CEU][hapmap];0.95[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446801	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446805	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446811	0.80[YRI][hapmap]
rs9446813	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9446814	1.00[CEU][hapmap];0.94[YRI][hapmap];0.92[AFR][1000 genomes]
rs9446816	1.00[CEU][hapmap];0.93[AFR][1000 genomes]
rs9446817	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446818	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9446819	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9446820	1.00[CEU][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446821	1.00[CEU][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446823	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9446853	1.00[CEU][hapmap]
rs9446858	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73710000-73740000	Weak transcription	HMEC	breast
2	chr6:73717600-73733600	Weak transcription	HSMM	muscle
3	chr6:73717800-73737800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:73718600-73739400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73722200-73733400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr6:73722200-73737000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:73722200-73751800	Weak transcription	Primary B cells from cord blood	blood
8	chr6:73724400-73730600	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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