Variant report

Variant	rs9446811
Chromosome Location	chr6:73706991-73706992
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73706895..73708402-chr6:73708716..73710747,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs1574007	0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs59154326	0.90[EUR][1000 genomes]
rs59821553	0.80[AFR][1000 genomes]
rs60061207	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6903848	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6924579	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6938067	0.82[LWK][hapmap];0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs7741001	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7752654	0.83[EUR][1000 genomes]
rs7753405	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7774630	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.92[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9446793	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9446794	0.85[YRI][hapmap]
rs9446799	0.85[YRI][hapmap]
rs9446800	0.85[YRI][hapmap]
rs9446801	0.81[YRI][hapmap]
rs9446806	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9446807	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[YRI][hapmap];0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446808	1.00[CEU][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9446812	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446813	0.80[AFR][1000 genomes]
rs9446814	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[LWK][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes]
rs9446816	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs9446820	0.84[YRI][hapmap]
rs9446821	0.80[YRI][hapmap]
rs9446822	0.80[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73696800-73716400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73705600-73717400	Weak transcription	Aorta	Aorta
4	chr6:73706200-73709600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:73706400-73707000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:73706600-73707200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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