Variant report

Variant	rs9446808
Chromosome Location	chr6:73697966-73697967
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs60061207	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6903848	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs6924579	0.84[AMR][1000 genomes]
rs7741001	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7753405	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7774630	1.00[CEU][hapmap];0.80[YRI][hapmap];0.83[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9446793	1.00[CEU][hapmap];0.84[AMR][1000 genomes]
rs9446806	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9446807	1.00[CEU][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9446811	1.00[CEU][hapmap];0.90[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9446812	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73696800-73716400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73697600-73698000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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