Variant report

Variant	rs7752654
Chromosome Location	chr6:73681162-73681163
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs59154326	0.93[EUR][1000 genomes]
rs60061207	0.90[EUR][1000 genomes]
rs6903848	0.93[EUR][1000 genomes]
rs6924579	0.93[EUR][1000 genomes]
rs7741001	0.93[EUR][1000 genomes]
rs7753405	0.93[EUR][1000 genomes]
rs7774630	0.93[EUR][1000 genomes]
rs9446793	0.93[EUR][1000 genomes]
rs9446806	0.93[EUR][1000 genomes]
rs9446807	0.83[EUR][1000 genomes]
rs9446811	0.83[EUR][1000 genomes]
rs9446812	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73666200-73686000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73673000-73688000	Weak transcription	Primary T cells from cord blood	blood
4	chr6:73674200-73683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr6:73676600-73687000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:73677000-73682200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
7	chr6:73679000-73685000	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:73679000-73685400	Weak transcription	HSMMtube	muscle
9	chr6:73679200-73686000	Weak transcription	HSMM	muscle
10	chr6:73679600-73686200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr6:73680200-73681800	Weak transcription	Fetal Heart	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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