Variant report

Variant	rs9446801
Chromosome Location	chr6:73688335-73688336
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs11967126	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1574007	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs16883160	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs56752027	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57053969	1.00[EUR][1000 genomes]
rs58410601	1.00[EUR][1000 genomes]
rs59821553	1.00[EUR][1000 genomes]
rs60410946	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60563419	1.00[EUR][1000 genomes]
rs60690955	1.00[EUR][1000 genomes]
rs6920341	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs6934303	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938067	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73531793	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533925	1.00[EUR][1000 genomes]
rs73533926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73535910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753218	1.00[EUR][1000 genomes]
rs7744354	1.00[CEU][hapmap]
rs7745866	0.85[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7764373	1.00[CEU][hapmap]
rs9442873	1.00[CEU][hapmap];0.87[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442875	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9442876	1.00[CEU][hapmap];0.93[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446794	1.00[CEU][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9446799	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes]
rs9446800	1.00[CEU][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446805	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446811	0.81[YRI][hapmap]
rs9446813	1.00[EUR][1000 genomes]
rs9446814	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs9446816	1.00[CEU][hapmap]
rs9446817	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446818	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9446819	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9446820	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446821	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446822	1.00[CEU][hapmap];0.94[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446823	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs9446853	1.00[CEU][hapmap]
rs9446858	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73687400-73688400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:73687400-73690000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr6:73687600-73694000	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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