Variant report

Variant	rs9446805
Chromosome Location	chr6:73696784-73696785
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C6orf221-6	chr6:73696036-73697473	NONHSAT113530

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11967126	1.00[EUR][1000 genomes]
rs1574007	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16883160	1.00[EUR][1000 genomes]
rs56752027	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57053969	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58410601	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59821553	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60410946	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60563419	1.00[EUR][1000 genomes]
rs60690955	1.00[EUR][1000 genomes]
rs6920341	1.00[EUR][1000 genomes]
rs6934303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938067	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73531793	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533925	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73533926	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533936	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73535910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753218	1.00[EUR][1000 genomes]
rs7745866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753310	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442873	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442875	1.00[EUR][1000 genomes]
rs9442876	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446794	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9446799	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9446800	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446801	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446813	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9446814	0.87[AFR][1000 genomes]
rs9446816	0.88[AFR][1000 genomes]
rs9446817	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446818	1.00[EUR][1000 genomes]
rs9446819	1.00[EUR][1000 genomes]
rs9446820	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446821	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446822	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446823	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73696200-73696800	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
3	chr6:73696200-73697000	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr6:73696400-73697600	Enhancers	Primary neutrophils fromperipheralblood	blood
5	chr6:73696600-73697000	Active TSS	Brain Hippocampus Middle	brain
6	chr6:73696600-73697800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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