Variant report

Variant	rs56752027
Chromosome Location	chr6:73720108-73720109
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11967126	1.00[EUR][1000 genomes]
rs1574007	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16883160	1.00[EUR][1000 genomes]
rs57053969	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58410601	0.95[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59821553	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60410946	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60563419	1.00[EUR][1000 genomes]
rs60690955	1.00[EUR][1000 genomes]
rs6920341	1.00[EUR][1000 genomes]
rs6934303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938067	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73531793	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533925	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73533926	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533936	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73535910	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753218	1.00[EUR][1000 genomes]
rs7745866	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442873	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442875	1.00[EUR][1000 genomes]
rs9442876	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446794	1.00[EUR][1000 genomes]
rs9446799	1.00[EUR][1000 genomes]
rs9446800	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446805	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446813	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9446814	0.95[AFR][1000 genomes]
rs9446816	0.96[AFR][1000 genomes]
rs9446817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446818	1.00[EUR][1000 genomes]
rs9446819	1.00[EUR][1000 genomes]
rs9446820	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446821	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446822	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446823	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73710000-73740000	Weak transcription	HMEC	breast
2	chr6:73714800-73723200	Weak transcription	GM12878-XiMat	blood
3	chr6:73717600-73733600	Weak transcription	HSMM	muscle
4	chr6:73717800-73721800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:73717800-73737800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:73718600-73721400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73718600-73739400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr6:73718800-73721400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr6:73719000-73721600	Weak transcription	Primary B cells from cord blood	blood
10	chr6:73720000-73720400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links