Variant report

Variant	rs73535910
Chromosome Location	chr6:73736254-73736255
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73736185..73738096-chr6:73742597..73744343,2	MCF-7	breast:

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs11967126	1.00[EUR][1000 genomes]
rs1574007	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16883160	1.00[EUR][1000 genomes]
rs56752027	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57053969	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58410601	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59821553	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60410946	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6920341	1.00[EUR][1000 genomes]
rs6934303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938067	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73531793	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533925	0.84[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73533926	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533936	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753218	1.00[EUR][1000 genomes]
rs7745866	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753310	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442875	1.00[EUR][1000 genomes]
rs9442876	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446794	1.00[EUR][1000 genomes]
rs9446799	1.00[EUR][1000 genomes]
rs9446800	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446801	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446805	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446813	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9446814	0.82[AFR][1000 genomes]
rs9446816	0.83[AFR][1000 genomes]
rs9446817	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446818	1.00[EUR][1000 genomes]
rs9446819	1.00[EUR][1000 genomes]
rs9446820	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446821	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446822	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446823	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
2	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73710000-73740000	Weak transcription	HMEC	breast
2	chr6:73717800-73737800	Weak transcription	Primary hematopoietic stem cells	blood
3	chr6:73718600-73739400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr6:73722200-73737000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
5	chr6:73722200-73751800	Weak transcription	Primary B cells from cord blood	blood
6	chr6:73731200-73737400	Weak transcription	Primary T cells from cord blood	blood
7	chr6:73734600-73740200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr6:73734600-73742200	Weak transcription	HSMMtube	muscle
9	chr6:73734800-73739600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:73734800-73742200	Weak transcription	Osteobl	bone
11	chr6:73735000-73739800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:73735000-73740200	Weak transcription	HSMM	muscle
13	chr6:73736200-73738000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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