Variant report

Variant	rs73531793
Chromosome Location	chr6:73676689-73676690
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11967126	1.00[EUR][1000 genomes]
rs1574007	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs16883160	1.00[EUR][1000 genomes]
rs56752027	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57053969	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58410601	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59821553	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs60410946	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60563419	1.00[EUR][1000 genomes]
rs60690955	1.00[EUR][1000 genomes]
rs6920341	1.00[EUR][1000 genomes]
rs6934303	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6938067	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533925	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73533926	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73533936	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73535910	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73753218	1.00[EUR][1000 genomes]
rs7745866	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7753310	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442873	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442875	1.00[EUR][1000 genomes]
rs9442876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446794	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9446799	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9446800	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446801	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446805	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446813	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9446814	0.81[AFR][1000 genomes]
rs9446816	0.82[AFR][1000 genomes]
rs9446817	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446818	1.00[EUR][1000 genomes]
rs9446819	1.00[EUR][1000 genomes]
rs9446820	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446821	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446822	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9446823	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830691	chr6:73530978-73743648	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73607600-73715400	Weak transcription	Primary B cells from cord blood	blood
2	chr6:73664800-73677400	Weak transcription	Aorta	Aorta
3	chr6:73666200-73686000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr6:73673000-73688000	Weak transcription	Primary T cells from cord blood	blood
5	chr6:73674200-73678600	Weak transcription	HSMM	muscle
6	chr6:73674200-73683000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73675600-73679000	Weak transcription	Fetal Heart	heart
8	chr6:73676000-73677000	Enhancers	HUVEC	blood vessel
9	chr6:73676200-73676800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr6:73676200-73676800	Enhancers	HMEC	breast
11	chr6:73676200-73676800	Enhancers	NHEK	skin
12	chr6:73676200-73677600	Enhancers	Primary neutrophils fromperipheralblood	blood
13	chr6:73676400-73676800	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr6:73676400-73676800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr6:73676400-73676800	Enhancers	Osteobl	bone
16	chr6:73676400-73677000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr6:73676400-73677000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr6:73676400-73677200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr6:73676600-73678800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr6:73676600-73687000	Weak transcription	Primary hematopoietic stem cells	blood

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