Variant report

Variant	rs60563419
Chromosome Location	chr6:73491310-73491311
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73485870..73488428-chr6:73490842..73492773,2	K562	blood:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10943047	1.00[EUR][1000 genomes]
rs11967126	1.00[EUR][1000 genomes]
rs1574007	1.00[EUR][1000 genomes]
rs16882670	1.00[EUR][1000 genomes]
rs16883160	1.00[EUR][1000 genomes]
rs2039107	1.00[EUR][1000 genomes]
rs28402218	1.00[EUR][1000 genomes]
rs4311478	1.00[EUR][1000 genomes]
rs4403240	1.00[EUR][1000 genomes]
rs56752027	1.00[EUR][1000 genomes]
rs57053969	1.00[EUR][1000 genomes]
rs58410601	1.00[EUR][1000 genomes]
rs59021804	1.00[EUR][1000 genomes]
rs59821553	1.00[EUR][1000 genomes]
rs60410946	1.00[EUR][1000 genomes]
rs60690955	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6453595	1.00[EUR][1000 genomes]
rs6903897	1.00[EUR][1000 genomes]
rs6920341	1.00[EUR][1000 genomes]
rs6924417	1.00[EUR][1000 genomes]
rs6934303	1.00[EUR][1000 genomes]
rs6938067	1.00[EUR][1000 genomes]
rs73531793	1.00[EUR][1000 genomes]
rs73533925	1.00[EUR][1000 genomes]
rs73533926	1.00[EUR][1000 genomes]
rs73533936	1.00[EUR][1000 genomes]
rs73753218	1.00[EUR][1000 genomes]
rs73756006	1.00[EUR][1000 genomes]
rs7746456	1.00[EUR][1000 genomes]
rs7753310	1.00[EUR][1000 genomes]
rs7772464	1.00[EUR][1000 genomes]
rs9293893	1.00[EUR][1000 genomes]
rs9442873	1.00[EUR][1000 genomes]
rs9442875	1.00[EUR][1000 genomes]
rs9446794	1.00[EUR][1000 genomes]
rs9446799	1.00[EUR][1000 genomes]
rs9446800	1.00[EUR][1000 genomes]
rs9446801	1.00[EUR][1000 genomes]
rs9446805	1.00[EUR][1000 genomes]
rs9446813	1.00[EUR][1000 genomes]
rs9446817	1.00[EUR][1000 genomes]
rs9446818	1.00[EUR][1000 genomes]
rs9446819	1.00[EUR][1000 genomes]
rs9446820	1.00[EUR][1000 genomes]
rs9446821	1.00[EUR][1000 genomes]
rs9446822	1.00[EUR][1000 genomes]
rs9446823	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73470400-73492600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:73470400-73492600	Weak transcription	Psoas Muscle	Psoas
3	chr6:73479600-73507800	Weak transcription	Primary T cells from cord blood	blood
4	chr6:73480800-73493800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:73485200-73492600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:73487800-73493600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:73489400-73492800	Weak transcription	Osteobl	bone
8	chr6:73489800-73507000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:73490200-73494800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr6:73490800-73494600	Enhancers	Fetal Heart	heart
11	chr6:73491000-73491800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:73491200-73492400	Weak transcription	HMEC	breast

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