Variant report

Variant	rs28402218
Chromosome Location	chr6:73328247-73328248
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10943047	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11967126	1.00[EUR][1000 genomes]
rs16882670	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2039107	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4311478	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4403240	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59021804	1.00[EUR][1000 genomes]
rs60563419	1.00[EUR][1000 genomes]
rs60690955	1.00[EUR][1000 genomes]
rs6453595	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903897	1.00[EUR][1000 genomes]
rs6924417	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73756006	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7746456	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7772464	1.00[EUR][1000 genomes]
rs9293893	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73323800-73328800	Weak transcription	Primary T helper cells fromperipheralblood	blood
2	chr6:73324600-73329400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr6:73326200-73329400	Weak transcription	Muscle Satellite Cultured Cells	--
4	chr6:73326400-73329000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr6:73326400-73329200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr6:73326600-73328800	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:73326600-73329000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr6:73326600-73329000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr6:73326600-73329200	Weak transcription	Primary B cells from cord blood	blood
10	chr6:73326800-73328800	Weak transcription	Fetal Heart	heart
11	chr6:73327000-73328400	Weak transcription	Primary T cells from cord blood	blood
12	chr6:73327600-73328800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr6:73327800-73329000	Weak transcription	Primary T cells fromperipheralblood	blood
14	chr6:73328200-73329000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr6:73328200-73329400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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