Variant report

Variant	rs7771888
Chromosome Location	chr6:73918923-73918924
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73917306..73919203-chr6:73947739..73949540,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs16883160	1.00[CEU][hapmap]
rs520570	1.00[CEU][hapmap]
rs6920341	1.00[CEU][hapmap]
rs73460443	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs73460448	1.00[EUR][1000 genomes]
rs7739551	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7744354	1.00[CEU][hapmap]
rs7764373	1.00[CEU][hapmap]
rs7771553	1.00[CEU][hapmap];1.00[GIH][hapmap];0.82[MKK][hapmap];0.89[YRI][hapmap]
rs9442875	1.00[CEU][hapmap]
rs9442876	1.00[CEU][hapmap]
rs9446816	1.00[CEU][hapmap]
rs9446818	1.00[CEU][hapmap]
rs9446819	1.00[CEU][hapmap]
rs9446820	1.00[CEU][hapmap]
rs9446821	1.00[CEU][hapmap]
rs9446822	1.00[CEU][hapmap]
rs9446823	1.00[CEU][hapmap]
rs9446852	1.00[CEU][hapmap]
rs9446853	1.00[CEU][hapmap]
rs9446858	1.00[CEU][hapmap]
rs966427	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1022151	chr6:73876795-73996828	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv538304	chr6:73876795-73996828	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	esv3436887	chr6:73918478-73933410	Enhancers ZNF genes & repeats Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	esv3490217	chr6:73918493-73933458	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
6	esv3490218	chr6:73918506-73933339	Enhancers Weak transcription Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
7	esv3490220	chr6:73918506-73933339	Weak transcription Enhancers Strong transcription	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	esv3372384	chr6:73918524-73933409	Weak transcription Enhancers Strong transcription ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73913400-73919600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr6:73916200-73919400	Enhancers	Stomach Mucosa	stomach
3	chr6:73916200-73933800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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