Variant report

Variant	rs966427
Chromosome Location	chr6:73968705-73968706
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11961485	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11962073	1.00[EUR][1000 genomes]
rs11964811	1.00[EUR][1000 genomes]
rs4708053	1.00[EUR][1000 genomes]
rs520570	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs531672	1.00[EUR][1000 genomes]
rs562270	1.00[EUR][1000 genomes]
rs571508	1.00[EUR][1000 genomes]
rs577250	1.00[EUR][1000 genomes]
rs58857515	1.00[EUR][1000 genomes]
rs59903417	1.00[EUR][1000 genomes]
rs6905319	1.00[EUR][1000 genomes]
rs7744354	1.00[CEU][hapmap]
rs7764373	1.00[CEU][hapmap]
rs7771553	1.00[CEU][hapmap]
rs7771888	1.00[CEU][hapmap]
rs9446853	1.00[CEU][hapmap]
rs9446858	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1022151	chr6:73876795-73996828	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv538304	chr6:73876795-73996828	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1030079	chr6:73920050-73984084	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
5	nsv886157	chr6:73922561-73969722	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73934000-73972400	Weak transcription	Ovary	ovary
2	chr6:73950400-73972200	Weak transcription	Right Atrium	heart
3	chr6:73957800-73971600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr6:73958200-73972400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr6:73967200-73968800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr6:73967200-73969400	Weak transcription	HUES6 Cell Line	embryonic stem cell
7	chr6:73967200-73971800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:73968400-73969400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr6:73968600-73968800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:73968600-73968800	Enhancers	H9 Cell Line	embryonic stem cell
11	chr6:73968600-73971600	Weak transcription	GM12878-XiMat	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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