Variant report
| Variant | rs571508 |
|---|---|
| Chromosome Location | chr6:74111009-74111010 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234882 | Chromatin interaction |
| ENSG00000234025 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:31)
| rs_ID | r2[population] |
|---|---|
| rs1066686 | 1.00[AMR][1000 genomes] |
| rs11961485 | 1.00[EUR][1000 genomes] |
| rs11962073 | 1.00[EUR][1000 genomes] |
| rs11964811 | 1.00[EUR][1000 genomes] |
| rs311687 | 1.00[AMR][1000 genomes] |
| rs4708053 | 0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs471125 | 1.00[AMR][1000 genomes] |
| rs472956 | 1.00[AMR][1000 genomes] |
| rs489006 | 1.00[AMR][1000 genomes] |
| rs497243 | 1.00[AMR][1000 genomes] |
| rs505344 | 1.00[AMR][1000 genomes] |
| rs520570 | 1.00[EUR][1000 genomes] |
| rs528895 | 1.00[AMR][1000 genomes] |
| rs531672 | 1.00[EUR][1000 genomes] |
| rs562270 | 1.00[EUR][1000 genomes] |
| rs571304 | 1.00[AMR][1000 genomes] |
| rs577250 | 1.00[EUR][1000 genomes] |
| rs58857515 | 1.00[EUR][1000 genomes] |
| rs59903417 | 1.00[EUR][1000 genomes] |
| rs6905319 | 1.00[EUR][1000 genomes] |
| rs73450693 | 1.00[EUR][1000 genomes] |
| rs73452548 | 1.00[EUR][1000 genomes] |
| rs73754636 | 1.00[EUR][1000 genomes] |
| rs7750842 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9350496 | 0.85[AFR][1000 genomes] |
| rs9442927 | 1.00[EUR][1000 genomes] |
| rs9446898 | 1.00[AMR][1000 genomes] |
| rs9446934 | 1.00[EUR][1000 genomes] |
| rs9446936 | 1.00[EUR][1000 genomes] |
| rs9446937 | 1.00[EUR][1000 genomes] |
| rs966427 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3410973 | chr6:73716033-74419545 | Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 191 gene(s) | inside rSNPs | diseases |
| 2 | nsv830693 | chr6:74049342-74216080 | Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:74105400-74117200 | Weak transcription | Placenta | Placenta |
| 2 | chr6:74111000-74111800 | Active TSS | K562 | blood |
