Variant report
| Variant | rs528895 |
|---|---|
| Chromosome Location | chr6:74067934-74067935 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
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| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000234025 | Chromatin interaction |
| ENSG00000234882 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:14)
| rs_ID | r2[population] |
|---|---|
| rs1066686 | 1.00[AMR][1000 genomes] |
| rs311687 | 1.00[AMR][1000 genomes] |
| rs4708053 | 1.00[AMR][1000 genomes] |
| rs471125 | 1.00[AMR][1000 genomes] |
| rs472956 | 1.00[AMR][1000 genomes] |
| rs474694 | 0.91[AFR][1000 genomes] |
| rs489006 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs497243 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs505344 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs571304 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs571508 | 1.00[AMR][1000 genomes] |
| rs6931707 | 1.00[AMR][1000 genomes] |
| rs7750842 | 1.00[AMR][1000 genomes] |
| rs9446898 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
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| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3410973 | chr6:73716033-74419545 | Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 191 gene(s) | inside rSNPs | diseases |
| 2 | nsv830693 | chr6:74049342-74216080 | Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 27 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:74061800-74071200 | Weak transcription | ES-UCSF4 Cell Line | embryonic stem cell |
