Variant report

Variant	rs9446898
Chromosome Location	chr6:74113663-74113664
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1066686	1.00[AMR][1000 genomes]
rs311687	1.00[AMR][1000 genomes]
rs4708053	1.00[AMR][1000 genomes]
rs471125	1.00[AMR][1000 genomes]
rs472956	1.00[AMR][1000 genomes]
rs474694	1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs489006	1.00[AMR][1000 genomes]
rs497243	0.83[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs505344	1.00[AMR][1000 genomes]
rs528895	1.00[AMR][1000 genomes]
rs571304	1.00[AMR][1000 genomes]
rs571508	1.00[AMR][1000 genomes]
rs7750842	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74105400-74117200	Weak transcription	Placenta	Placenta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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