Variant report

Variant	rs474694
Chromosome Location	chr6:74075771-74075772
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:3)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:74075738-74075788	HCF	heart:	n/a
2	chr6:74075738-74075788	RPTEC	kidney:	n/a
3	chr6:74075738-74075788	MCF-7	breast:	n/a
4	chr6:74075738-74075788	CMK	blood:	n/a
5	chr6:74075738-74075788	HUVEC	blood vessel:	n/a
6	chr6:74075738-74075788	ProgFib	skin:	n/a
7	chr6:74075738-74075788	Jurkat	blood:	n/a
8	chr6:74075738-74075788	BJ	skin:	n/a
9	chr6:74075738-74075788	NB4	blood:	n/a
10	chr6:74075738-74075788	SK-N-SH_RA	brain:	n/a
11	chr6:74075738-74075788	HMEC	breast:	n/a
12	chr6:74075738-74075788	SK-N-SH	brain:	n/a
13	chr6:74075738-74075788	HAEpiC	amniotic membrane:	n/a
14	chr6:74075738-74075788	HCPEpiC	choroid plexus:	n/a
15	chr6:74075738-74075788	AG09309	skin:	n/a
16	chr6:74075738-74075788	Hela-S3	cervix:	n/a
17	chr6:74075738-74075788	GM12891	blood:	n/a
18	chr6:74075738-74075788	PFSK-1	brain:	n/a
19	chr6:74075738-74075788	AG10803	skin:	n/a
20	chr6:74075738-74075788	SKMC	muscle:	n/a
21	chr6:74075738-74075788	IMR90	lung:	fetal
22	chr6:74075738-74075788	K562	blood:	n/a
23	chr6:74075738-74075788	BE2_C	brain:	n/a
24	chr6:74075738-74075788	NHBE	bronchial:	n/a
25	chr6:74075738-74075788	Hepatocyte	liver:	n/a
26	chr6:74075738-74075788	AG04450	lung:	fetal
27	chr6:74075738-74075788	SAEC	small airway:	n/a
28	chr6:74075738-74075788	HRPEpiC	eye:	n/a
29	chr6:74075738-74075788	U87	brain:	n/a
30	chr6:74075738-74075788	SK-N-MC	brain:	n/a
31	chr6:74075738-74075788	NH-A	brain:	n/a
32	chr6:74075738-74075788	NT2-D1	testis:	n/a
33	chr6:74075738-74075788	HIPEpiC	eye:	n/a
34	chr6:74075738-74075788	HCT-116	colon:	n/a
35	chr6:74075738-74075788	HEEpiC	esophagus:	n/a
36	chr6:74075738-74075788	PrEC	prostate:	n/a
37	chr6:74075738-74075788	H1-hESC	embryonic stem cell:	embryo
38	chr6:74075738-74075788	AG09319	gingival:	n/a
39	chr6:74075738-74075788	PANC-1	pancreas:	n/a
40	chr6:74075738-74075788	GM12892	blood:	n/a
41	chr6:74075738-74075788	HNPCEpiC	eye:	n/a
42	chr6:74075738-74075788	AG04449	skin:	fetal
43	chr6:74075738-74075788	ovcar-3	ovarian:	n/a
44	chr6:74075738-74075788	GM19239	blood:	n/a
45	chr6:74075738-74075788	HepG2	liver:	n/a
46	chr6:74075738-74075788	A549	lung:	n/a
47	chr6:74075738-74075788	GM12878	blood:	n/a
48	chr6:74075738-74075788	AoSMC	blood vessel:	n/a
49	chr6:74075738-74075788	HRE	kidney:	n/a
50	chr6:74075738-74075788	LNCaP	prostate:	n/a

(count:3 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	6:74000304-74012200..6:74062967-74076046	GM12878	blood:
2	chr6:74075299..74077290-chr6:74080280..74082342,2	MCF-7	breast:
3	6:73859137-73881637..6:74062967-74076046	GM12878	blood:

No data

Variant related genes	Relation type
OOEP-AS1	CpG island
ENSG00000234025	Chromatin interaction
ENSG00000234882	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs311687	0.83[YRI][hapmap]
rs489006	0.82[AFR][1000 genomes]
rs497243	0.81[YRI][hapmap];0.98[AFR][1000 genomes]
rs505344	0.84[AFR][1000 genomes]
rs528895	0.91[AFR][1000 genomes]
rs571304	0.91[AFR][1000 genomes]
rs9446898	1.00[YRI][hapmap];0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74073000-74077400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:74073600-74078800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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