Variant report

Variant	rs562270
Chromosome Location	chr6:73992594-73992595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73988362..73991724-chr6:73992246..73995569,3	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11961485	1.00[EUR][1000 genomes]
rs11962073	1.00[EUR][1000 genomes]
rs11964811	1.00[EUR][1000 genomes]
rs4708053	1.00[EUR][1000 genomes]
rs520570	1.00[EUR][1000 genomes]
rs531672	1.00[EUR][1000 genomes]
rs571508	1.00[EUR][1000 genomes]
rs577250	1.00[EUR][1000 genomes]
rs58857515	1.00[EUR][1000 genomes]
rs59903417	1.00[EUR][1000 genomes]
rs6905319	1.00[EUR][1000 genomes]
rs73450693	1.00[EUR][1000 genomes]
rs966427	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv1022151	chr6:73876795-73996828	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv538304	chr6:73876795-73996828	Flanking Active TSS Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73973400-74000400	Weak transcription	Aorta	Aorta
2	chr6:73973600-74018600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr6:73973600-74018600	Weak transcription	A549	lung
4	chr6:73973600-74018800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:73973800-73995600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr6:73973800-73995600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr6:73973800-74000400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr6:73974000-73995600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr6:73974000-74000400	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr6:73974000-74009000	Weak transcription	HSMM	muscle
11	chr6:73974000-74018400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr6:73974200-73992600	Weak transcription	Colon Smooth Muscle	Colon
13	chr6:73974400-74000400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr6:73974400-74000400	Weak transcription	NHDF-Ad	bronchial
15	chr6:73974400-74008800	Weak transcription	NH-A	brain
16	chr6:73974400-74009400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:73974600-73992600	Weak transcription	Brain Angular Gyrus	brain
18	chr6:73974600-74008600	Weak transcription	Brain Cingulate Gyrus	brain
19	chr6:73974800-73994400	Weak transcription	NHLF	lung
20	chr6:73974800-73995600	Weak transcription	Hela-S3	cervix
21	chr6:73974800-74000400	Weak transcription	Brain Anterior Caudate	brain
22	chr6:73974800-74008600	Weak transcription	Brain Inferior Temporal Lobe	brain
23	chr6:73977400-74008800	Weak transcription	Fetal Brain Male	brain
24	chr6:73979200-74004400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr6:73983800-74018600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr6:73984400-74000200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr6:73984400-74018600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
28	chr6:73984600-74002200	Weak transcription	Primary T cells from cord blood	blood
29	chr6:73984800-74000800	Weak transcription	HUES48 Cell Line	embryonic stem cell
30	chr6:73984800-74004400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr6:73984800-74008600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr6:73985200-74000400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
33	chr6:73985200-74004600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr6:73985200-74008800	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr6:73985400-73993200	Weak transcription	Fetal Intestine Small	intestine
36	chr6:73985400-74000000	Weak transcription	HMEC	breast
37	chr6:73985400-74000400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr6:73985400-74000600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr6:73985400-74009000	Weak transcription	H1 Cell Line	embryonic stem cell
40	chr6:73985600-73995600	Weak transcription	Osteobl	bone
41	chr6:73985600-74000400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:73985600-74000400	Weak transcription	Brain Germinal Matrix	brain
43	chr6:73985600-74000400	Weak transcription	Fetal Muscle Leg	muscle
44	chr6:73985600-74004800	Weak transcription	HUES6 Cell Line	embryonic stem cell
45	chr6:73985600-74008800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr6:73985600-74008800	Weak transcription	Thymus	Thymus
47	chr6:73985800-73996800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
48	chr6:73985800-74000200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
49	chr6:73985800-74000400	Weak transcription	Fetal Muscle Trunk	muscle
50	chr6:73985800-74006800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links