Variant report

Variant	rs59903417
Chromosome Location	chr6:74074179-74074180
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11961485	1.00[EUR][1000 genomes]
rs11962073	1.00[EUR][1000 genomes]
rs11964811	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4708053	1.00[EUR][1000 genomes]
rs520570	1.00[EUR][1000 genomes]
rs531672	1.00[EUR][1000 genomes]
rs562270	1.00[EUR][1000 genomes]
rs571508	1.00[EUR][1000 genomes]
rs577250	1.00[EUR][1000 genomes]
rs58857515	1.00[EUR][1000 genomes]
rs6905319	1.00[EUR][1000 genomes]
rs73450693	1.00[EUR][1000 genomes]
rs73452548	1.00[EUR][1000 genomes]
rs9446934	1.00[EUR][1000 genomes]
rs966427	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3410973	chr6:73716033-74419545	Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	191 gene(s)	inside rSNPs	diseases
2	nsv830693	chr6:74049342-74216080	Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74073000-74077400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr6:74073600-74078800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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