Variant report

Variant	rs12110561
Chromosome Location	chr6:73456055-73456056
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10943047	1.00[CEU][hapmap]
rs11967126	1.00[CEU][hapmap]
rs16882707	1.00[CEU][hapmap]
rs2039107	1.00[CEU][hapmap]
rs4311478	1.00[CEU][hapmap]
rs4403240	1.00[CEU][hapmap]
rs6453595	1.00[CEU][hapmap]
rs6903897	1.00[CEU][hapmap]
rs6918190	1.00[CEU][hapmap]
rs6924417	1.00[CEU][hapmap]
rs7743912	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7746456	1.00[CEU][hapmap]
rs7749542	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs7749673	1.00[CEU][hapmap]
rs867520	1.00[CEU][hapmap]
rs9293893	1.00[CEU][hapmap]
rs9293908	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9293912	0.81[AMR][1000 genomes]
rs9442843	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9442844	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs9442846	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886154	chr6:73442239-73471683	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73450000-73458400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73451200-73457600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73451200-73458000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:73451800-73458400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:73452000-73457800	Weak transcription	GM12878-XiMat	blood
6	chr6:73452400-73457800	Weak transcription	HSMMtube	muscle
7	chr6:73452600-73469800	Weak transcription	Aorta	Aorta
8	chr6:73454000-73458400	Weak transcription	Psoas Muscle	Psoas
9	chr6:73454600-73456200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:73454600-73456400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:73454600-73456400	Enhancers	HSMM	muscle
12	chr6:73454800-73456200	Enhancers	NH-A	brain
13	chr6:73455000-73456800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:73455200-73456400	Enhancers	Fetal Heart	heart
15	chr6:73455200-73458400	Enhancers	NHEK	skin
16	chr6:73455200-73460000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:73455400-73456200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr6:73455400-73456200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:73455400-73456200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr6:73455400-73456400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:73455400-73457000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:73455400-73461000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:73455600-73458200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:73455600-73458400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:73455800-73456200	Flanking Active TSS	HMEC	breast
26	chr6:73455800-73456200	Weak transcription	Osteobl	bone
27	chr6:73455800-73458400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:73456000-73456200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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