Variant report

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12110561	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs2223940	0.84[AMR][1000 genomes]
rs7743912	0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9293908	1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9293912	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442843	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442844	1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442846	0.97[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886154	chr6:73442239-73471683	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73452600-73469800	Weak transcription	Aorta	Aorta
2	chr6:73460000-73468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:73460000-73469600	Weak transcription	HSMM	muscle
4	chr6:73460400-73468600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:73461000-73468800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:73464600-73469800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr6:73465200-73469800	Enhancers	Fetal Heart	heart
8	chr6:73465600-73470400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr6:73466200-73469200	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr6:73467200-73469600	Weak transcription	Osteobl	bone
11	chr6:73467200-73470200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:73467400-73468400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:73467800-73468400	Enhancers	Adipose Nuclei	Adipose
14	chr6:73467800-73469200	Weak transcription	Psoas Muscle	Psoas
15	chr6:73467800-73470600	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr6:73468000-73468800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:73468200-73468400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr6:73468200-73468400	Enhancers	Brain Germinal Matrix	brain
19	chr6:73468200-73468800	Enhancers	GM12878-XiMat	blood
20	chr6:73468200-73470200	Enhancers	NHEK	skin

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