Variant report

Variant	rs9293912
Chromosome Location	chr6:73471065-73471066
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12110561	0.81[AMR][1000 genomes]
rs2223940	0.90[YRI][hapmap];0.98[AFR][1000 genomes];0.94[AMR][1000 genomes]
rs7743912	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7749542	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9293908	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442843	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442844	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9442846	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886154	chr6:73442239-73471683	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73469200-73471400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr6:73470000-73471400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr6:73470200-73471400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:73470200-73474000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr6:73470200-73478800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:73470400-73471600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73470400-73471600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr6:73470400-73475000	Weak transcription	Primary hematopoietic stem cells	blood
9	chr6:73470400-73492600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr6:73470400-73492600	Weak transcription	Psoas Muscle	Psoas
11	chr6:73470600-73471600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
12	chr6:73470600-73472000	Weak transcription	Osteobl	bone
13	chr6:73470800-73471800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr6:73470800-73473000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr6:73470800-73479400	Weak transcription	HSMM	muscle
16	chr6:73471000-73471800	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links