Variant report

Variant	rs16882712
Chromosome Location	chr6:73414730-73414731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:73414426..73415387-chr6:73821209..73822009,2	MCF-7	breast:
2	chr6:73121613..73122518-chr6:73414359..73415239,2	MCF-7	breast:
3	chr6:73414396..73415444-chr6:73839415..73839971,4	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs16882715	0.80[MKK][hapmap];0.91[YRI][hapmap];0.82[EUR][1000 genomes]
rs17692055	0.89[EUR][1000 genomes]
rs17748888	0.93[EUR][1000 genomes]
rs17748966	0.93[EUR][1000 genomes]
rs55791694	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56307817	0.82[EUR][1000 genomes]
rs56379143	0.82[EUR][1000 genomes]
rs56897294	0.93[EUR][1000 genomes]
rs57822223	0.93[EUR][1000 genomes]
rs58412450	0.82[EUR][1000 genomes]
rs58599475	0.93[EUR][1000 genomes]
rs58816739	0.89[EUR][1000 genomes]
rs60412240	0.93[EUR][1000 genomes]
rs60620751	0.91[EUR][1000 genomes]
rs62411982	0.80[EUR][1000 genomes]
rs6453597	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6903897	0.82[YRI][hapmap]
rs6918661	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6934995	0.91[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs6938189	0.82[CEU][hapmap];0.91[EUR][1000 genomes]
rs73531872	0.89[EUR][1000 genomes]
rs73533641	0.89[EUR][1000 genomes]
rs73533649	0.93[EUR][1000 genomes]
rs73533670	0.93[EUR][1000 genomes]
rs73533685	0.93[EUR][1000 genomes]
rs73535764	0.93[EUR][1000 genomes]
rs73535765	0.93[EUR][1000 genomes]
rs73535768	0.93[EUR][1000 genomes]
rs73535770	0.91[EUR][1000 genomes]
rs73535771	0.91[EUR][1000 genomes]
rs73535789	0.85[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73537767	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73537770	0.96[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs73537781	0.96[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73756018	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs768790	1.00[MEX][hapmap]
rs7758797	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv1794408	chr6:73363298-73419987	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73392400-73429800	Weak transcription	HSMM	muscle
2	chr6:73399400-73419200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73399400-73429200	Weak transcription	Aorta	Aorta
4	chr6:73399400-73438200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr6:73413200-73418600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr6:73413200-73423000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr6:73413600-73419000	Weak transcription	Primary B cells from cord blood	blood
8	chr6:73413600-73419600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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