Variant report

Variant	rs62411982
Chromosome Location	chr6:73351339-73351340
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73334237..73336368-chr6:73349929..73351569,2	K562	blood:
2	chr6:73351149..73353791-chr6:73359149..73361413,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs16882712	0.80[EUR][1000 genomes]
rs17692055	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs17748888	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17748966	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55791694	0.80[EUR][1000 genomes]
rs56897294	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs57822223	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58599475	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs58816739	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs60412240	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60620751	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6453597	0.80[EUR][1000 genomes]
rs6938189	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73531872	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73533641	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs73533649	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73533670	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73533685	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73535764	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73535765	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73535768	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73535770	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73535771	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73537767	0.80[EUR][1000 genomes]
rs73537781	0.80[EUR][1000 genomes]
rs73756018	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	esv3347486	chr6:73283590-73445976	Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73334400-73358800	Weak transcription	HSMM	muscle
2	chr6:73334600-73356200	Weak transcription	HMEC	breast
3	chr6:73336200-73359000	Weak transcription	Primary hematopoietic stem cells	blood
4	chr6:73336200-73362800	Weak transcription	Primary B cells from cord blood	blood
5	chr6:73337400-73356200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:73338600-73358600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:73346800-73358800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr6:73349400-73354000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:73349400-73354800	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr6:73350000-73354800	Weak transcription	Psoas Muscle	Psoas
11	chr6:73350800-73351400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr6:73351000-73351600	Enhancers	GM12878-XiMat	blood
13	chr6:73351000-73352000	Genic enhancers	Primary hematopoietic stem cells short term culture	blood

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