Variant report

Variant	rs9293909
Chromosome Location	chr6:73465837-73465838
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73458624..73460863-chr6:73463471..73466417,2	K562	blood:

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12213677	1.00[CEU][hapmap];1.00[JPT][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214158	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs2144089	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2840792	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs2840794	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2982750	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs4538671	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs62410661	0.98[EUR][1000 genomes]
rs6453601	0.92[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs6906492	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6918661	1.00[JPT][hapmap]
rs6931185	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937555	0.98[EUR][1000 genomes]
rs7743692	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7756180	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293907	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293910	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs9293911	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442841	1.00[CEU][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes]
rs9442842	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446743	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446746	1.00[CEU][hapmap];1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs9446749	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9689048	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886154	chr6:73442239-73471683	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73452600-73469800	Weak transcription	Aorta	Aorta
2	chr6:73460000-73468800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr6:73460000-73469600	Weak transcription	HSMM	muscle
4	chr6:73460400-73468600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr6:73461000-73467000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr6:73461000-73468800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr6:73464600-73469800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr6:73465200-73469800	Enhancers	Fetal Heart	heart
9	chr6:73465400-73466000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:73465600-73466000	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr6:73465600-73466600	Enhancers	NHEK	skin
12	chr6:73465600-73470400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:73465800-73466200	Enhancers	Skeletal Muscle Female	skeletal muscle
14	chr6:73465800-73468200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links