Variant report

Variant	rs9293907
Chromosome Location	chr6:73456933-73456934
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:73456866..73459087-chr6:73460199..73463115,2	K562	blood:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10046418	0.91[AMR][1000 genomes]
rs12213677	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12214158	1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs2144089	0.83[EUR][1000 genomes]
rs2840792	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2840794	0.83[EUR][1000 genomes]
rs2982750	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2982751	0.91[AMR][1000 genomes]
rs2982752	0.91[AMR][1000 genomes]
rs4538671	1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs62410661	0.98[EUR][1000 genomes]
rs6453601	1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs6906492	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6931185	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72937555	0.98[EUR][1000 genomes]
rs7743692	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7756180	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293909	1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9293910	1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs9293911	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9442841	1.00[JPT][hapmap];0.99[EUR][1000 genomes]
rs9442842	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446743	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9446746	1.00[JPT][hapmap];0.98[EUR][1000 genomes]
rs9446749	1.00[JPT][hapmap];0.93[EUR][1000 genomes]
rs9689048	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886154	chr6:73442239-73471683	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73450000-73458400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73451200-73457600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73451200-73458000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:73451800-73458400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:73452000-73457800	Weak transcription	GM12878-XiMat	blood
6	chr6:73452400-73457800	Weak transcription	HSMMtube	muscle
7	chr6:73452600-73469800	Weak transcription	Aorta	Aorta
8	chr6:73454000-73458400	Weak transcription	Psoas Muscle	Psoas
9	chr6:73455200-73458400	Enhancers	NHEK	skin
10	chr6:73455200-73460000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr6:73455400-73457000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr6:73455400-73461000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr6:73455600-73458200	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr6:73455600-73458400	Weak transcription	Skeletal Muscle Male	skeletal muscle
15	chr6:73455800-73458400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr6:73456200-73457200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr6:73456200-73457800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr6:73456200-73457800	Weak transcription	NH-A	brain
19	chr6:73456200-73461000	Enhancers	HMEC	breast
20	chr6:73456400-73457400	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr6:73456400-73457400	Weak transcription	HSMM	muscle
22	chr6:73456400-73457400	Weak transcription	Osteobl	bone
23	chr6:73456400-73457800	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr6:73456800-73457200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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