Variant report

Variant	rs2840792
Chromosome Location	chr6:73456119-73456120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10046418	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12193344	0.82[JPT][hapmap]
rs12213677	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12214158	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs2144089	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2840794	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2982750	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2982751	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2982752	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4538671	0.81[CEU][hapmap];0.83[EUR][1000 genomes]
rs62410661	0.83[EUR][1000 genomes]
rs6906492	0.85[CEU][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6931185	0.85[CEU][hapmap];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs72937555	0.83[EUR][1000 genomes]
rs7743692	0.84[CEU][hapmap]
rs7756180	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7758723	0.82[JPT][hapmap]
rs9293907	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9293909	0.84[CEU][hapmap];0.85[EUR][1000 genomes]
rs9293910	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs9293911	0.85[CEU][hapmap];0.85[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9442841	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs9442842	0.84[CEU][hapmap];0.81[EUR][1000 genomes]
rs9446743	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9446746	0.85[CEU][hapmap];0.83[EUR][1000 genomes]
rs9446749	0.85[CEU][hapmap]
rs9689048	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023809	chr6:73157813-73477997	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv538303	chr6:73157813-73477997	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv830689	chr6:73385557-73544404	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv830690	chr6:73391428-73574304	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv886154	chr6:73442239-73471683	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:73450000-73458400	Weak transcription	Primary hematopoietic stem cells	blood
2	chr6:73451200-73457600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
3	chr6:73451200-73458000	Weak transcription	Primary B cells from cord blood	blood
4	chr6:73451800-73458400	Weak transcription	Primary B cells from peripheral blood	blood
5	chr6:73452000-73457800	Weak transcription	GM12878-XiMat	blood
6	chr6:73452400-73457800	Weak transcription	HSMMtube	muscle
7	chr6:73452600-73469800	Weak transcription	Aorta	Aorta
8	chr6:73454000-73458400	Weak transcription	Psoas Muscle	Psoas
9	chr6:73454600-73456200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr6:73454600-73456400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr6:73454600-73456400	Enhancers	HSMM	muscle
12	chr6:73454800-73456200	Enhancers	NH-A	brain
13	chr6:73455000-73456800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr6:73455200-73456400	Enhancers	Fetal Heart	heart
15	chr6:73455200-73458400	Enhancers	NHEK	skin
16	chr6:73455200-73460000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr6:73455400-73456200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr6:73455400-73456200	Enhancers	H1 Cell Line	embryonic stem cell
19	chr6:73455400-73456200	Enhancers	Placenta Amnion	Placenta Amnion
20	chr6:73455400-73456400	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr6:73455400-73457000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr6:73455400-73461000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr6:73455600-73458200	Weak transcription	HUES64 Cell Line	embryonic stem cell
24	chr6:73455600-73458400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr6:73455800-73456200	Flanking Active TSS	HMEC	breast
26	chr6:73455800-73456200	Weak transcription	Osteobl	bone
27	chr6:73455800-73458400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:73456000-73456200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin

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